Transcript: lnc-ST6GALNAC5-1:1

Basic information

LNCipedia transcript ID: lnc-ST6GALNAC5-1:1 
LNCipedia gene ID: lnc-ST6GALNAC5-1
Ensembl Gene ID: ENSG00000230498
Ensembl Transcript ID: ENST00000454305
Location (hg19): chr1:77533605-77544167
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 497 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000237; ENST00000454305.1; RP4-706A16.2-001; OTTHUMT00000026695.1
Alternative gene names: XLOC_000262; linc-AK5-2; ENSG00000230498.1; RP4-706A16.2; OTTHUMG00000009688.1; RP4-564M11.2; AL035409.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -313.4403 non-coding 
CPAT coding probability 61.69% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ST6GALNAC5-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ST6GALNAC5-1:1
3.1 lnc-ST6GALNAC5-1:1
4.0 lnc-ST6GALNAC5-1:1
4.1 lnc-ST6GALNAC5-1:1
5.0 lnc-ST6GALNAC5-1:1
5.1 lnc-AK5-6:1
5.2 lnc-ST6GALNAC5-1:1