Transcript: lnc-ST8SIA4-3:3

Basic information

LNCipedia transcript ID: lnc-ST8SIA4-3:3 
LNCipedia gene ID: lnc-ST8SIA4-3
Location (hg19): chr5:99785458-99869856
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1543 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT103002
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.8964 non-coding 
CPAT coding probability 2.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ST8SIA4-3:3 no no no no

Available literature

  1. Yang (2015), Microarray profiling of long non-coding RNA (lncRNA) associated with hypertrophic cardiomyopathy., BMC Cardiovasc Disord


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ST8SIA4-3:3
4.0 lnc-ST8SIA4-3:3
4.1 lnc-ST8SIA4-3:3
5.0 lnc-ST8SIA4-3:3
5.1 lnc-ANKRD34B-239:10
5.2 lnc-ST8SIA4-3:3