Transcript: lnc-STAP1-16:1

Basic information

LNCipedia transcript ID: lnc-STAP1-16:1 
LNCipedia gene ID: lnc-STAP1-16
Location (hg19): chr4:68623576-68623852
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 277 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000248049.2|HBMT00001063001.1
Alternative gene names: LOC550112


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -129.3859 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STAP1-16:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 UBA6-AS1:28
5.0 UBA6-AS1:28
5.1 lnc-ART3-96:1
5.2 lnc-STAP1-16:1