Transcript: lnc-STC2-1:1

Basic information

LNCipedia transcript ID: lnc-STC2-1:1 
LNCipedia gene ID: lnc-STC2-1
Location (hg19): chr5:172720132-172721732
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1008 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000501670; TCONS_00009813; NONHSAT105174
Alternative gene names: ENSG00000247006; XLOC_005086; linc-NKX2-5-2; AC106731.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -265.0226 non-coding 
CPAT coding probability 26.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STC2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STC2-1:1
3.1 lnc-STC2-1:1
4.0 lnc-STC2-1:1
4.1 lnc-STC2-1:1
5.0 lnc-STC2-1:1
5.1 lnc-PDLIM7-67:5
5.2 lnc-STC2-1:1