Transcript: lnc-STIM2-13:1

Basic information

LNCipedia transcript ID: lnc-STIM2-13:1 
LNCipedia gene ID: lnc-STIM2-13
Location (hg19): chr4:28754425-28754905
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 429 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00007497; ENST00000511520; ENST00000511520.1; RP11-655M19.1-001; OTTHUMT00000360453.2; NONHSAT095915
Alternative gene names: XLOC_003488; linc-PCDH7-5; ENSG00000248183; RP11-655M19.1; ENSG00000248183.1; OTTHUMG00000160397.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.1024 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STIM2-13:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STIM2-5:1
3.1 lnc-STIM2-5:1
4.0 lnc-STIM2-13:1
4.1 lnc-STIM2-13:1
5.0 lnc-STIM2-13:1
5.1 lnc-GABRB1-117:1
5.2 lnc-STIM2-13:1