Transcript: lnc-STIM2-3:2

Basic information

LNCipedia transcript ID: lnc-STIM2-3:2 
LNCipedia gene ID: lnc-STIM2-3
Location (hg19): chr4:27904205-27995255
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 327 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00008023
Alternative gene names: XLOC_003486; linc-PCDH7-7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -133.7355 non-coding 
CPAT coding probability 6.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STIM2-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STIM2-3:2
3.1 lnc-STIM2-3:2
4.0 lnc-STIM2-3:2
4.1 lnc-STIM2-3:2
5.0 lnc-STIM2-3:2
5.1 lnc-USP17L28-129:3
5.2 lnc-STIM2-3:2