Transcript: lnc-STX4-1:1

Basic information

LNCipedia transcript ID: lnc-STX4-1:1 
LNCipedia gene ID: lnc-STX4-1
Location (hg19): chr16:31054471-31061201
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 461 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000570266.1; RP11-196G11.2-001; OTTHUMT00000433356.1; NONHSAT141841
Alternative gene names: ENSG00000260911.1; RP11-196G11.2; OTTHUMG00000176730.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.3947 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STX4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STX4-1:1
4.0 lnc-STX4-1:1
4.1 lnc-STX4-1:1
5.0 lnc-STX4-1:1
5.1 lnc-ZNF646-4:4
5.2 lnc-STX4-1:1