Transcript: lnc-STX4-1:5

Basic information

LNCipedia transcript ID: lnc-STX4-1:5 
LNCipedia gene ID: lnc-STX4-1
Ensembl Gene ID: ENSG00000260911
Ensembl Transcript ID: ENST00000570266
Location (hg19): chr16:31054471-31061189
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 449 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000570266.2
Alternative gene names: ENSG00000260911.2; RP11-196G11.2; AC135050.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -16.3947 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STX4-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-STX4-1:5
4.1 lnc-STX4-1:5
5.0 lnc-STX4-1:5
5.1 lnc-ZNF646-4:5
5.2 lnc-STX4-1:5