Transcript: lnc-STX6-6:6

Basic information

LNCipedia transcript ID: lnc-STX6-6:6 
LNCipedia gene ID: lnc-STX6-6
Location (hg19): chr1:181073340-181074351
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 315 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000084659.1|FTMT20100061960.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -163.1253 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STX6-6:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-STX6-6:6
5.0 lnc-STX6-6:6
5.1 lnc-SH2D1B-199:6
5.2 lnc-STX6-6:6