Transcript: lnc-STXBP4-1:1

Basic information

LNCipedia transcript ID: lnc-STXBP4-1:1 
LNCipedia gene ID: lnc-STXBP4-1
Location (hg19): chr17:53246184-53250993
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4810 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000565472.1; CTC-462L7.1-001; OTTHUMT00000431443.2
Alternative gene names: ENSG00000261589.1; CTC-462L7.1; OTTHUMG00000176063.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.7878 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STXBP4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STXBP4-1:1
4.0 lnc-STXBP4-1:1
4.1 lnc-STXBP4-1:1
5.0 lnc-STXBP4-1:1
5.1 lnc-PRR11-54:2
5.2 lnc-STXBP4-1:1