Transcript: lnc-SUFU-1:5

Basic information

LNCipedia transcript ID: lnc-SUFU-1:5 
LNCipedia gene ID: lnc-SUFU-1
Location (hg19): chr10:104225775-104228397
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 424 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000428200.1; RP11-18I14.7-005; OTTHUMT00000050072.1; NONHSAT016134
Alternative gene names: ENSG00000243628.1; RP11-18I14.7; OTTHUMG00000018960.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.3322 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SUFU-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SUFU-1:5
4.0 lnc-SUFU-1:5
4.1 lnc-SUFU-1:5
5.0 lnc-SUFU-1:5
5.1 lnc-SMC3-90:7
5.2 lnc-SUFU-1:5