Transcript: lnc-SUMF1-4:1

Basic information

LNCipedia transcript ID: lnc-SUMF1-4:1 
LNCipedia gene ID: lnc-SUMF1-4
Location (hg19): chr3:4998211-5022059
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 23849 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000235831.2|ENCT00000299795.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 28.355 non-coding 
CPAT coding probability 32.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SUMF1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 BHLHE40-AS1:11
5.0 BHLHE40-AS1:11
5.1 lnc-PRRT3-45:1
5.2 lnc-SUMF1-4:1