Transcript: lnc-SUMO3-1:4

Basic information

LNCipedia transcript ID: lnc-SUMO3-1:4 
LNCipedia gene ID: lnc-SUMO3-1
Location (hg19): chr21:46197292-46221659
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 288 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT082878
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.8802 non-coding 
CPAT coding probability 6.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SUMO3-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTTG1IP-1:4
4.0 lnc-PTTG1IP-1:4
4.1 lnc-PTTG1IP-1:4
5.0 lnc-PTTG1IP-1:4
5.1 lnc-POFUT2-16:4
5.2 lnc-SUMO3-1:4