Transcript: lnc-SUN3-2:1

Basic information

LNCipedia transcript ID: lnc-SUN3-2:1 
LNCipedia gene ID: lnc-SUN3-2
Ensembl Gene ID: ENSG00000228173
Ensembl Transcript ID: ENST00000456513
Location (hg19): chr7:48700171-48702901
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 373 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013167; ENST00000456513; ENST00000456513.1; AC091770.3-001; OTTHUMT00000341970.1; NONHSAT120529
Alternative gene names: XLOC_006437; linc-SUN3-1; ENSG00000228173; AC091770.3; ENSG00000228173.1; OTTHUMG00000155841.1; AC091770.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -171.3487 non-coding 
CPAT coding probability 1.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SUN3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SUN3-2:1
3.1 lnc-SUN3-2:1
4.0 lnc-SUN3-2:1
4.1 lnc-SUN3-2:1
5.0 lnc-SUN3-2:1
5.1 lnc-TNS3-13:1
5.2 lnc-SUN3-2:1