Transcript: lnc-SVOP-1:2

Basic information

LNCipedia transcript ID: lnc-SVOP-1:2 
LNCipedia gene ID: lnc-SVOP-1
Location (hg19): chr12:109301517-109303778
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2262 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000569754.1; RP11-423G4.7-001; OTTHUMT00000421360.2; NONHSAT030580
Alternative gene names: ENSG00000260987.1; RP11-423G4.7; OTTHUMG00000172923.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.1085 non-coding 
CPAT coding probability 2.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SVOP-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SVOP-1:2
4.0 lnc-SVOP-1:2
4.1 lnc-SVOP-1:2
5.0 lnc-SVOP-1:2
5.1 lnc-GPN3-31:2
5.2 lnc-SVOP-1:2