Transcript: lnc-SYCE3-1:1

Basic information

LNCipedia transcript ID: lnc-SYCE3-1:1 
LNCipedia gene ID: lnc-SYCE3-1
Location (hg19): chr22:50981206-50983413
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 321 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029745; NONHSAT087499
Alternative gene names: XLOC_014418; linc-ODF3B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 20.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYCE3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SYCE3-1:1
3.1 lnc-SYCE3-1:1
4.0 lnc-SYCE3-1:1
4.1 lnc-SYCE3-1:1
5.0 lnc-SYCE3-1:1
5.1 lnc-DENND6B-9:1
5.2 lnc-SYCE3-1:1