Transcript: lnc-SYCP3-3:2

Basic information

LNCipedia transcript ID: lnc-SYCP3-3:2 
LNCipedia gene ID: lnc-SYCP3-3
Location (hg19): chr12:102122426-102125444
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 665 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT030295
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.0712 non-coding 
CPAT coding probability 14.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYCP3-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SYCP3-3:2
4.0 lnc-SYCP3-3:2
4.1 lnc-SYCP3-3:2
5.0 lnc-SYCP3-3:2
5.1 lnc-NUP37-11:2
5.2 lnc-SYCP3-3:2