Transcript: lnc-SYK-6:7

Basic information

LNCipedia transcript ID: lnc-SYK-6:7 
LNCipedia gene ID: lnc-SYK-6
Location (hg19): chr9:94186315-94189880
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3133 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000233081.1|HBMT00001466884.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.7913 non-coding 
CPAT coding probability 4.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYK-6:7 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SYK-6:7
5.0 lnc-SYK-6:7
5.1 lnc-FAM120A-76:4
5.2 lnc-SYK-6:7