Transcript: lnc-SYNE2-3:7

Basic information

LNCipedia transcript ID: lnc-SYNE2-3:7 
LNCipedia gene ID: lnc-SYNE2-3
Location (hg19): chr14:64108779-64132575
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 14424 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000019247.1|ENCT00000126792.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 25.6214 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYNE2-3:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SYNE2-3:7
5.0 lnc-SYNE2-3:7
5.1 lnc-ACTR10-73:5
5.2 lnc-SYNE2-3:7