Transcript: lnc-SYNE3-2:2

Basic information

LNCipedia transcript ID: lnc-SYNE3-2:2 
LNCipedia gene ID: lnc-SYNE3-2
Location (hg19): chr14:95856125-95857241
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 456 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022844; NONHSAT039444
Alternative gene names: XLOC_011111; linc-CLMN-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -249.4145 non-coding 
CPAT coding probability 10.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYNE3-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C14orf49-2:1
3.1 lnc-C14orf49-2:1
4.0 lnc-C14orf49-2:1
4.1 lnc-C14orf49-2:1
5.0 lnc-C14orf49-2:1
5.1 lnc-SYNE3-2:1
5.2 lnc-SYNE3-2:2