Transcript: lnc-SYT15-1:2

Basic information

LNCipedia transcript ID: lnc-SYT15-1:2 
LNCipedia gene ID: lnc-SYT15-1
Location (hg19): chr10:46937463-46947258
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 403 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000424615.1; RP11-38L15.2-001; OTTHUMT00000047833.1
Alternative gene names: ENSG00000229227.1; RP11-38L15.2; OTTHUMG00000018105.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.2791 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYT15-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SYT15-1:2
4.0 lnc-SYT15-1:2
4.1 lnc-SYT15-1:2
5.0 lnc-SYT15-1:2
5.1 lnc-NPY4R2-34:7
5.2 lnc-SYT15-1:2