Transcript: lnc-SYT15-1:4

Basic information

LNCipedia transcript ID: lnc-SYT15-1:4 
LNCipedia gene ID: lnc-SYT15-1
Ensembl Gene ID: ENSG00000229227
Ensembl Transcript ID: ENST00000593793
Location (hg19): chr10:46937608-46947552
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 552 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT013142; ENST00000593793.1
Alternative gene names: ENSG00000229227.4; RP11-38L15.2; ENSG00000229227.8; AL356056.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.4859 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYT15-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SYT15-1:4
4.0 lnc-SYT15-1:4
4.1 lnc-SYT15-1:4
5.0 lnc-SYT15-1:4
5.1 lnc-NPY4R2-34:3
5.2 lnc-SYT15-1:4