Transcript: lnc-SZRD1-4:2

Basic information

LNCipedia transcript ID: lnc-SZRD1-4:2 
LNCipedia gene ID: lnc-SZRD1-4
Location (hg19): chr1:16679040-16679908
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 382 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00000847; NONHSAT001102
Alternative gene names: XLOC_000062; linc-C1orf144-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.1318 non-coding 
CPAT coding probability 17.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SZRD1-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf144-1:1
3.1 lnc-C1orf144-1:1
4.0 lnc-C1orf144-4:1
4.1 lnc-C1orf144-4:1
5.0 lnc-C1orf144-4:1
5.1 lnc-SZRD1-4:1
5.2 lnc-SZRD1-4:2