Transcript: lnc-TAB2-1:2

Basic information

LNCipedia transcript ID: lnc-TAB2-1:2 
LNCipedia gene ID: lnc-TAB2-1
Ensembl Gene ID: ENSG00000228408
Ensembl Transcript ID: ENST00000443992
Location (hg19): chr6:149539137-149551295
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 466 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000443992.1; RP1-111D6.3-001; OTTHUMT00000042630.1; NONHSAT115489
Alternative gene names: ENSG00000228408.1; RP1-111D6.3; OTTHUMG00000015782.1; ENSG00000228408.5; ENSG00000228408.6; AL031056.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -208.657 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAB2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TAB2-1:2
4.0 lnc-TAB2-1:2
4.1 lnc-TAB2-1:2
5.0 lnc-TAB2-1:2
5.1 lnc-ULBP2-19:4
5.2 lnc-TAB2-1:2