Transcript: lnc-TACC2-9:1

Basic information

LNCipedia transcript ID: lnc-TACC2-9:1 
LNCipedia gene ID: lnc-TACC2-9
Location (hg19): chr10:123692835-123693971
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1137 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT016714; FPKM1_group_4049_transcript_11
Alternative gene names: ENST00000437593


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.1423 non-coding 
CPAT coding probability 4.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TACC2-9:1 no no no no

Available literature

  1. Luo (2015), Epigenetic regulation of lncRNA connects ubiquitin-proteasome system with infection-inflammation in preterm births and preterm premature rupture of membranes., BMC Pregnancy Childbirth


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TACC2-5:1
4.0 lnc-TACC2-5:1
4.1 ATE1-AS1:12
5.0 ATE1-AS1:12
5.1 lnc-EDRF1-81:1
5.2 lnc-TACC2-9:1