Transcript: lnc-TAF1A-5:1

Basic information

LNCipedia transcript ID: lnc-TAF1A-5:1 
LNCipedia gene ID: lnc-TAF1A-5
Location (hg19): chr1:222865737-222870249
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 672 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: l_197_chr1:222865736-222870249_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.6146 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAF1A-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TAF1A-3:1
4.0 lnc-TAF1A-3:1
4.1 lnc-TAF1A-3:1
5.0 lnc-TAF1A-3:1
5.1 lnc-LEFTY2-50:1
5.2 lnc-TAF1A-5:1