Transcript: lnc-TAF1B-2:1

Basic information

LNCipedia transcript ID: lnc-TAF1B-2:1 
LNCipedia gene ID: lnc-TAF1B-2
Ensembl Gene ID: ENSG00000269973
Ensembl Transcript ID: ENST00000602458
Location (hg19): chr2:10076489-10079719
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3231 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT069073; ENST00000602458.1
Alternative gene names: ENSG00000269973.1; RP11-95D17.1; AC010969.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.3449 non-coding 
CPAT coding probability 3.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAF1B-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TAF1B-2:1
4.0 lnc-TAF1B-2:1
4.1 lnc-TAF1B-2:1
5.0 lnc-TAF1B-2:1
5.1 lnc-SNX17-204:1
5.2 lnc-TAF1B-2:1