Transcript: lnc-TAF4-6:1

Basic information

LNCipedia transcript ID: lnc-TAF4-6:1 
LNCipedia gene ID: lnc-TAF4-6
Ensembl Gene ID: ENSG00000229755
Ensembl Transcript ID: ENST00000420710
Location (hg19): chr20:59652280-59652872
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 500 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028080; ENST00000420710; ENST00000420710.1; RP5-827L5.2-001; OTTHUMT00000079959.1; NONHSAT080675
Alternative gene names: XLOC_013828; linc-PPP1R3D-4; ENSG00000229755; RP5-827L5.2; ENSG00000229755.1; OTTHUMG00000032885.1; AL121910.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.4057 non-coding 
CPAT coding probability 1.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAF4-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-429E11.3.1-1:1
3.1 lnc-RP11-429E11.3.1-2:1
4.0 lnc-RP11-429E11.3.1-2:1
4.1 lnc-RP11-429E11.3.1-2:1
5.0 lnc-RP11-429E11.3.1-2:1
5.1 lnc-SPATA2-139:1
5.2 lnc-TAF4-6:1