Transcript: lnc-TAF4B-6:1

Basic information

LNCipedia transcript ID: lnc-TAF4B-6:1 
LNCipedia gene ID: lnc-TAF4B-6
Ensembl Gene ID: ENSG00000264790
Ensembl Transcript ID: ENST00000584547
Location (hg19): chr18:24923216-24926074
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 922 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000584547.1; RP11-26N15.2-001; OTTHUMT00000447200.1; NONHSAT058775
Alternative gene names: ENSG00000264790.1; RP11-26N15.2; OTTHUMG00000179582.1; AC021382.2; AC021382.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.7165 non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAF4B-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TAF4B-6:1
4.0 lnc-TAF4B-6:1
4.1 lnc-TAF4B-6:1
5.0 lnc-TAF4B-6:1
5.1 lnc-RIOK3-63:1
5.2 lnc-TAF4B-6:1