Transcript: lnc-TAGAP-1:1

Basic information

LNCipedia transcript ID: lnc-TAGAP-1:1 
LNCipedia gene ID: lnc-TAGAP-1
Ensembl Gene ID: ENSG00000285492
Ensembl Transcript ID: ENST00000446887
Location (hg19): chr6:159485760-159486305
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 331 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011603; ENST00000446887; ENST00000446887.1; RP1-111C20.3-001; OTTHUMT00000042889.1; NONHSAT115829
Alternative gene names: XLOC_005896; linc-TAGAP-4; ENSG00000226032; RP1-111C20.3; ENSG00000226032.1; OTTHUMG00000015922.1; AL035530.1; ENSG00000285492.1; AL356417.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.9026 non-coding 
CPAT coding probability 15.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAGAP-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TAGAP-1:1
3.1 lnc-TAGAP-1:1
4.0 lnc-TAGAP-1:1
4.1 lnc-TAGAP-1:1
5.0 lnc-TAGAP-1:1
5.1 lnc-TAGAP-1:1
5.2 lnc-TAGAP-1:1