Transcript: lnc-TAGAP-1:2

Basic information

LNCipedia transcript ID: lnc-TAGAP-1:2 
LNCipedia gene ID: lnc-TAGAP-1
Ensembl Gene ID: ENSG00000285492
Ensembl Transcript ID: ENST00000642829
Location (hg19): chr6:159472706-159542527
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 12705 bp
Exons: 5
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000642829.1
Alternative gene names: ENSG00000285492.1; AL356417.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -42.606 non-coding 
CPAT coding probability 94.20% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TAGAP-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-TAGAP-1:2
5.1 lnc-TAGAP-1:2
5.2 lnc-TAGAP-1:2