Transcript: lnc-TAMM41-5:2

Basic information

LNCipedia transcript ID: lnc-TAMM41-5:2 
LNCipedia gene ID: lnc-TAMM41-5
Location (hg19): chr3:11761930-11766453
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 453 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000414047.1; AC090939.1-001; OTTHUMT00000339236.1; NONHSAT087987
Alternative gene names: ENSG00000244030.1; AC090939.1; OTTHUMG00000155264.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -200.0801 non-coding 
CPAT coding probability 3.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAMM41-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VGLL4-1:2
4.0 lnc-VGLL4-1:2
4.1 lnc-VGLL4-1:2
5.0 lnc-VGLL4-1:2
5.1 lnc-TIMP4-11:2
5.2 lnc-TAMM41-5:2