Transcript: lnc-TAOK3-13:1

Basic information

LNCipedia transcript ID: lnc-TAOK3-13:1 
LNCipedia gene ID: lnc-TAOK3-13
Location (hg19): chr12:119413206-119418111
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1194 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc001tyk_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.1704 non-coding 
CPAT coding probability 7.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAOK3-13:1 no no no no

Available literature

  1. Ouyang (2014), NRAV, a long noncoding RNA, modulates antiviral responses through suppression of interferon-stimulated gene transcription., Cell Host Microbe


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TAOK3-13:1
4.0 lnc-TAOK3-13:1
4.1 lnc-TAOK3-13:1
5.0 lnc-TAOK3-13:1
5.1 lnc-GCN1-19:1
5.2 lnc-TAOK3-13:1