Transcript: lnc-TAOK3-1:3

Basic information

LNCipedia transcript ID: lnc-TAOK3-1:3 
LNCipedia gene ID: lnc-TAOK3-1
Location (hg19): chr12:118553516-118573733
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2577 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021410; NONHSAT031029
Alternative gene names: XLOC_010212; linc-VSIG10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.682 non-coding 
CPAT coding probability 2.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAOK3-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TAOK3-1:3
3.1 lnc-TAOK3-1:3
4.0 lnc-TAOK3-1:3
4.1 lnc-TAOK3-1:3
5.0 lnc-TAOK3-1:3
5.1 lnc-FBXO21-12:5
5.2 lnc-TAOK3-1:3