Transcript: lnc-TASP1-15:1

Basic information

LNCipedia transcript ID: lnc-TASP1-15:1 
LNCipedia gene ID: lnc-TASP1-15
Location (hg19): chr20:13000031-13000437
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 353 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000445249.1; RP11-157E14.3-001; OTTHUMT00000078029.1; NONHSAT078678
Alternative gene names: ENSG00000238144.1; RP11-157E14.3; OTTHUMG00000031896.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -213.7019 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TASP1-15:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TASP1-3:1
4.0 lnc-TASP1-3:1
4.1 lnc-TASP1-3:1
5.0 lnc-TASP1-3:1
5.1 lnc-JAG1-22:1
5.2 lnc-TASP1-15:1