Transcript: lnc-TASP1-4:5

Basic information

LNCipedia transcript ID: lnc-TASP1-4:5 
LNCipedia gene ID: lnc-TASP1-4
Ensembl Gene ID: ENSG00000278153
Ensembl Transcript ID: ENST00000611242
Location (hg19): chr20:13348938-13349350
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 413 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000611242.1
Alternative gene names: ENSG00000278153.1; RP4-585I14.3; AL121782.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -105.4682 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TASP1-4:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ESF1-4:1
4.1 lnc-ESF1-4:1
5.0 lnc-ESF1-4:1
5.1 lnc-JAG1-26:1
5.2 lnc-TASP1-4:5