Transcript: lnc-TASP1-5:1

Basic information

LNCipedia transcript ID: lnc-TASP1-5:1 
LNCipedia gene ID: lnc-TASP1-5
Location (hg19): chr20:12915491-12917960
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1213 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028621; NONHSAT078662
Alternative gene names: XLOC_013658; linc-JAG1-9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.9445 non-coding 
CPAT coding probability 2.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TASP1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TASP1-2:1
3.1 lnc-TASP1-5:1
4.0 lnc-TASP1-5:1
4.1 lnc-TASP1-5:1
5.0 lnc-TASP1-5:1
5.1 lnc-JAG1-5:13
5.2 lnc-TASP1-5:1