Transcript: lnc-TASP1-5:3

Basic information

LNCipedia transcript ID: lnc-TASP1-5:3 
LNCipedia gene ID: lnc-TASP1-5
Location (hg19): chr20:12915532-12916496
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 629 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028622; NONHSAT078667
Alternative gene names: XLOC_013658; linc-JAG1-9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.2209 non-coding 
CPAT coding probability 2.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TASP1-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TASP1-2:3
3.1 lnc-TASP1-5:3
4.0 lnc-TASP1-5:3
4.1 lnc-TASP1-5:3
5.0 lnc-TASP1-5:3
5.1 lnc-JAG1-5:17
5.2 lnc-TASP1-5:3