Transcript: lnc-TBC1D22A-4:1

Basic information

LNCipedia transcript ID: lnc-TBC1D22A-4:1 
LNCipedia gene ID: lnc-TBC1D22A-4
Ensembl Gene ID: ENSG00000224271
Ensembl Transcript ID: ENST00000423737
RefSeq ID: NR_122046
Location (hg19): chr22:48027423-48251349
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1815 bp
Exons: 9
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000423737; ENST00000423737.1; RP11-191L9.4-001; OTTHUMT00000317556.1; NR_122046; ENST00000423737.5; NR_122046.1
Alternative gene names: ENSG00000224271; RP11-191L9.4; ENSG00000224271.1; OTTHUMG00000150321.1; ENSG00000224271.5; AL117329.1; LOC284930


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.5555 non-coding 
CPAT coding probability 1.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBC1D22A-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TBC1D22A-4:1
3.1 lnc-TBC1D22A-4:1
4.0 lnc-TBC1D22A-4:1
4.1 lnc-TBC1D22A-4:1
5.0 lnc-TBC1D22A-4:1
5.1 lnc-GRAMD4-8:2
5.2 lnc-TBC1D22A-4:1