Transcript: lnc-TBC1D28-1:1

Basic information

LNCipedia transcript ID: lnc-TBC1D28-1:1 
LNCipedia gene ID: lnc-TBC1D28-1
Ensembl Gene ID: ENSG00000264885
Ensembl Transcript ID: ENST00000578214
Location (hg19): chr17:18570942-18572774
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1833 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000578214.1; RP11-815I9.4-001; OTTHUMT00000448136.1; NONHSAT146396
Alternative gene names: ENSG00000264885.1; RP11-815I9.4; OTTHUMG00000179787.1; AC026271.4; AC026271.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.9517 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBC1D28-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TBC1D28-1:1
4.0 lnc-TBC1D28-1:1
4.1 lnc-TBC1D28-1:1
5.0 lnc-TBC1D28-1:1
5.1 lnc-B9D1-33:1
5.2 lnc-TBC1D28-1:1