Transcript: lnc-TBC1D3K-1:2

Basic information

LNCipedia transcript ID: lnc-TBC1D3K-1:2 
LNCipedia gene ID: lnc-TBC1D3K-1
Location (hg19): chr17:36105206-36108563
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 660 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000558143.1; RP11-115K3.1-001; OTTHUMT00000417067.1; NONHSAT053288
Alternative gene names: ENSG00000259549.1; RP11-115K3.1; OTTHUMG00000172144.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.7403 non-coding 
CPAT coding probability 2.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBC1D3K-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TBC1D3F-1:1
4.0 lnc-TBC1D3F-1:1
4.1 lnc-TBC1D3F-1:1
5.0 lnc-TBC1D3F-1:1
5.1 lnc-RPL19-30:2
5.2 lnc-TBC1D3K-1:2