Transcript: lnc-TBCCD1-4:16

Basic information

LNCipedia transcript ID: lnc-TBCCD1-4:16 
LNCipedia gene ID: lnc-TBCCD1-4
Location (hg19): chr3:186452559-186463919
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 490 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000354642.2; RP11-573D15.8-001; OTTHUMT00000344649.1; NONHSAT093842
Alternative gene names: ENSG00000197099.2; RP11-573D15.8; OTTHUMG00000156574.3; ENSG00000197099.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -467.9912 non-coding 
CPAT coding probability 17.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBCCD1-4:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RFC4-4:1
4.0 lnc-TBCCD1-4:16
4.1 lnc-TBCCD1-4:16
5.0 lnc-TBCCD1-4:16
5.1 lnc-TBCCD1-4:16
5.2 lnc-TBCCD1-4:16