Transcript: lnc-TBCCD1-4:30

Basic information

LNCipedia transcript ID: lnc-TBCCD1-4:30 
LNCipedia gene ID: lnc-TBCCD1-4
Ensembl Gene ID: ENSG00000197099
Ensembl Transcript ID: ENST00000628253
Location (hg19): chr3:186359310-186461602
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 775 bp
Exons: 7
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000628253.2
Alternative gene names: ENSG00000197099.8; RP11-573D15.8; AC068631.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -213.3635 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBCCD1-4:30 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TBCCD1-4:30
4.1 lnc-TBCCD1-4:30
5.0 lnc-TBCCD1-4:30
5.1 lnc-TBCCD1-4:30
5.2 lnc-TBCCD1-4:30