Transcript: lnc-TBCCD1-4:59

Basic information

LNCipedia transcript ID: lnc-TBCCD1-4:59 
LNCipedia gene ID: lnc-TBCCD1-4
Ensembl Gene ID: ENSG00000197099
Ensembl Transcript ID: ENST00000455926
Location (hg19): chr3:186359304-186383492
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 409 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000455926.1; RP11-134F2.2-001; OTTHUMT00000344759.1; NONHSAT093833; ENST00000455926.3
Alternative gene names: ENSG00000236524.1; RP11-134F2.2; OTTHUMG00000156604.1; ENSG00000197099.8; RP11-573D15.8; AC068631.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.5686 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBCCD1-4:59 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TBCCD1-1:2
4.0 lnc-TBCCD1-4:59
4.1 lnc-TBCCD1-4:59
5.0 lnc-TBCCD1-4:59
5.1 lnc-TBCCD1-4:59
5.2 lnc-TBCCD1-4:59