Transcript: lnc-TBCK-1:1

Basic information

LNCipedia transcript ID: lnc-TBCK-1:1 
LNCipedia gene ID: lnc-TBCK-1
Ensembl Gene ID: ENSG00000249635
Ensembl Transcript ID: ENST00000513220
RefSeq ID: NR_125928
Location (hg19): chr4:106924474-106943635
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3526 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00007810; ENST00000513220.1; RP11-710F7.3-001; OTTHUMT00000364182.1; NONHSAT097700; NR_125928; NR_125928.1
Alternative gene names: XLOC_004040; linc-INTS12-3; ENSG00000249635.1; RP11-710F7.3; OTTHUMG00000161211.1; AC109361.1; LOC101929577


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.4047 non-coding 
CPAT coding probability 0.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBCK-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TBCK-1:1
3.1 lnc-TBCK-1:1
4.0 lnc-TBCK-1:1
4.1 lnc-TBCK-1:1
5.0 lnc-TBCK-1:1
5.1 lnc-SLC9B2-40:1
5.2 lnc-TBCK-1:1