Transcript: lnc-TCIM-2:2

Basic information

LNCipedia transcript ID: lnc-TCIM-2:2 
LNCipedia gene ID: lnc-TCIM-2
Location (hg19): chr8:39972023-39984685
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 668 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014683; NONHSAT126195
Alternative gene names: XLOC_006780; linc-C8orf4-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.5539 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TCIM-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C8orf4-2:3
3.1 lnc-C8orf4-2:3
4.0 lnc-C8orf4-2:3
4.1 lnc-C8orf4-2:3
5.0 lnc-C8orf4-2:3
5.1 lnc-KCNU1-64:2
5.2 lnc-TCIM-2:2