Transcript: lnc-TCIRG1-2:3

Basic information

LNCipedia transcript ID: lnc-TCIRG1-2:3 
LNCipedia gene ID: lnc-TCIRG1-2
Location (hg19): chr11:67889520-67897979
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 485 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000527519.1; CTD-2655K5.1-001; OTTHUMT00000394457.1
Alternative gene names: ENSG00000255236.1; CTD-2655K5.1; OTTHUMG00000167388.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.9121 non-coding 
CPAT coding probability 11.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TCIRG1-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TCIRG1-2:3
4.0 lnc-TCIRG1-2:3
4.1 lnc-TCIRG1-2:3
5.0 lnc-TCIRG1-2:3
5.1 lnc-TCIRG1-2:3
5.2 lnc-TCIRG1-2:3