Transcript: lnc-TCTA-1:1

Basic information

LNCipedia transcript ID: lnc-TCTA-1:1 
LNCipedia gene ID: lnc-TCTA-1
Location (hg19): chr3:49460379-49461864
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 711 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000424915.1; NICN1-AS1-001; OTTHUMT00000346325.1; NONHSAT089694
Alternative gene names: ENSG00000235261.1; NICN1-AS1; OTTHUMG00000156868.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.343 non-coding 
CPAT coding probability 5.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TCTA-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TCTA-1:1
4.0 lnc-TCTA-1:1
4.1 lnc-TCTA-1:1
5.0 lnc-TCTA-1:1
5.1 lnc-CCDC36-8:1
5.2 lnc-TCTA-1:1