Transcript: lnc-TDRD3-3:6

Basic information

LNCipedia transcript ID: lnc-TDRD3-3:6 
LNCipedia gene ID: lnc-TDRD3-3
Ensembl Gene ID: ENSG00000273550
Ensembl Transcript ID: ENST00000618134
Location (hg19): chr13:63609125-63671930
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 635 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000618134.1
Alternative gene names: ENSG00000273550.1; RP11-527N12.2; AL354810.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -230.3417 non-coding 
CPAT coding probability 4.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TDRD3-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AL445989.1-3:3
4.1 lnc-AL445989.1-3:3
5.0 lnc-AL445989.1-3:3
5.1 lnc-KL-272:3
5.2 lnc-TDRD3-3:6