Transcript: lnc-TEAD2-1:1

Basic information

LNCipedia transcript ID: lnc-TEAD2-1:1 
LNCipedia gene ID: lnc-TEAD2-1
Ensembl Gene ID: ENSG00000268686
Ensembl Transcript ID: ENST00000599433
RefSeq ID: NR_110729
Location (hg19): chr19:49871962-49891338
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3263 bp
Exons: 3
Sources: Biogazelle lncRNA chip; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000505462; NONHSAT067178; ENST00000599433.1; NR_110729; NR_110729.1
Alternative gene names: ENSG00000249897; ENSG00000268686.1; AC010524.2; AC010643.1; LOC101928295


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.5932 non-coding 
CPAT coding probability 5.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TEAD2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TEAD2-1:1
3.1 lnc-TEAD2-1:1
4.0 lnc-TEAD2-1:1
4.1 lnc-TEAD2-1:1
5.0 lnc-TEAD2-1:1
5.1 lnc-NOSIP-12:6
5.2 lnc-TEAD2-1:1